3UQF

c-SRC kinase domain in complex with BKI RM-1-89

Structural Biology Knowledgebase: 3UQF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UQF

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 66148.59

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase Src A, B 286 Gallus gallus EC#: 2.7.10.2 IUBMB
Fragment: kinase domain (UNP residues 251-533)
Gene Name(s): SRC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BK5
Query on BK5

A, B 3-(6-ethoxynaphthalen-2-yl)-1-(propan-2-yl)- 1H-pyrazolo[3,4-d]pyrimidin-4-amine
RM-1-89 (Synonym)
C20 H21 N5 O
MJOCJDMQRCJQJF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BK5 IC50: 380 nM (99) BindingDB
Ki: 200 nM (99) BindingDB

Ki: 200 nM  BindingMOAD
Ki: 20000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.226
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.79 α = 79.32
b = 63.24 β = 89.35
c = 73.30 γ = 89.88

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-20
  • Released Date: 2012-03-14
  • Deposition author(s): Merritt, E.A., Larson, E.T.

Revision History

  • 2012-04-18
    Type: Citation | Details: Citation update