3MKZ

Structure of SopB(155-272)-18mer complex, P21 form

Structural Biology Knowledgebase: 3MKZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MKZ

Classification: DNA-BINDING PROTEIN / DNA

Total Structure Weight: 75302.99


Macromolecule Entities
Molecule Chains Length Organism Details
Protein sopB A, B, N, U 121 Escherichia coli Fragment: UNP residues 155 to 272
Mutation: E255D
Gene Name(s): sopB B ECOK12F047
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') C, D, Y, Z 18 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, U, Z CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.213
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.38 α = 90.00
b = 47.12 β = 115.97
c = 118.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-15
  • Released Date: 2010-05-05
  • Deposition author(s): Schumacher, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4