3BLO

TGT mutant in complex with queuine

Structural Biology Knowledgebase: 3BLO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BLO

Classification: TRANSFERASE

Total Structure Weight: 43314.72

Macromolecule Entities
Molecule Chains Length Organism Details
Queuine tRNA-ribosyltransferase A 386 Zymomonas mobilis EC#: 2.4.2.29 IUBMB
Mutation: Y106F, C158V, A232S, V233G, T312K
Gene Name(s): tgt ZMO0363
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
QEI
Query on QEI

A 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent- 2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3- d]pyrimidin-4-one
queuine (Synonym)
C12 H15 N5 O3
WYROLENTHWJFLR-ACLDMZEESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.180
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.38 α = 90.00
b = 64.78 β = 95.91
c = 70.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-11
  • Released Date: 2008-12-16
  • Deposition author(s): Tidten, N., Heine, A., Reuter, K., Klebe, G.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update