2Y6R

STRUCTURE OF THE TETX MONOOXYGENASE IN COMPLEX WITH THE SUBSTRATE 7-CHLORTETRACYCLINE

Structural Biology Knowledgebase: 2Y6R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y6R

Classification: OXIDOREDUCTASE

Total Structure Weight: 184465.22

Macromolecule Entities
Molecule Chains Length Organism Details
TETX2 PROTEIN A, B, C, D 398 Bacteroides thetaiotaomicron Fragment: FAD-BINDING DOMAIN, RESIDUES 11-388
Mutation: E94A, K95A
Gene Name(s): tetX2

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CTC
Query on CTC

A, B, C, D 7-CHLOROTETRACYCLINE
C22 H23 Cl N2 O8
CYDMQBQPVICBEU-XRNKAMNCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.225
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.42 α = 110.99
b = 78.87 β = 90.27
c = 86.61 γ = 92.87

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-25
  • Released Date: 2011-03-23
  • Deposition author(s): Volkers, G., Palm, G.J., Weiss, M.S., Wright, G.D., Hinrichs, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4