2X50

Crystal structure of Trypanothione reductase from Leishmania infantum in complex with NADPH and silver

Structural Biology Knowledgebase: 2X50 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2X50

Classification: OXIDOREDUCTASE

Total Structure Weight: 113975.41

Macromolecule Entities
Molecule Chains Length Organism Details
TRYPANOTHIONE REDUCTASE A, B 510 Leishmania infantum EC#: 1.8.1.12 IUBMB
Fragment: YES RESIDUES 1-490
Gene Name(s): TRYR LINJ_05_0350

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AG
Query on AG

A, B SILVER ION
Ag
FOIXSVOLVBLSDH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.229
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.32 α = 90.00
b = 102.32 β = 90.00
c = 193.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-03
  • Released Date: 2011-01-12
  • Deposition author(s): Baiocco, P., Ilari, A., Colotti, G.

Revision History

  • 2014-06-18
    Type: Citation | Details: JRNL
  • 2011-11-16
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-11-16
    Type: Citation | Details: JRNL
  • 2011-11-16
    Type: Version format compliance | Details: REMARK 4