2WXV

STRUCTURE OF CDK2-CYCLIN A WITH A PYRAZOLO(4,3-H) QUINAZOLINE-3-CARBOXAMIDE INHIBITOR

Structural Biology Knowledgebase: 2WXV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WXV

Classification: TRANSFERASE

Total Structure Weight: 131993.86

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A, C 309 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CYCLIN-A2 B, D 265 Homo sapiens Fragment: C-TERMINAL PORTION, RESIDUES 173-432
Gene Name(s): CCNA2 Gene View CCN1 CCNA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
WXV
Query on WXV

A, C N,1-DIMETHYL-8-{[1-(METHYLSULFONYL)PIPERIDIN- 4-YL]AMINO}-1H-PYRAZOLO[4,3-H]QUINAZOLINE- 3-CARBOXAMIDE
C18 H23 N7 O3 S
MIDIIMBLQHSLFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
WXV N/A in BindingDB
N/A in BindingMoad
IC50: 2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.211
  • Space Group: P 62 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 185.51 α = 90.00
b = 185.51 β = 90.00
c = 215.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-10
  • Released Date: 2010-02-23
  • Deposition author(s): Traquandi, G., Ciomei, M., Ballinari, D., Casale, E., Colombo, N., Croci, V., Fiorentini, F., Isacchi, A., Longo, A., Mercurio, C., Panzeri, A., Pastori, W., Pevarello, P., Volpi, D., Roussel, P., Vulpetti, A., Brasca, M.G.

Revision History

  • 2011-11-09
    Type: Refinement description | Details: REMARK 3
  • 2011-11-09
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-11-09
    Type: Version format compliance | Details: REMARK 4
  • 2011-11-09
    Type: Citation | Details: JRNL
  • 2011-11-09
    Type: Other | Details: REMARK 900