2VV2

hPPARgamma Ligand binding domain in complex with 5-HEPA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 2VV2

Classification: RECEPTOR

Total Structure Weight: 63854.39

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A, B 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Details: 5-HEPA
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5HE
Query on 5HE

A, B (5R,6E,8Z,11Z,14Z,17Z)-5-hydroxyicosa-6,8,11,14,17- pentaenoic acid
C20 H30 O3
FTAGQROYQYQRHF-CBVHGRPESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.223
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 93.78 α = 90.00
b = 61.73 β = 103.65
c = 120.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-02
  • Released Date: 2008-08-19
  • Deposition author(s): Itoh, T., Fairall, L., Schwabe, J.W.R.

Revision History

  • 2012-06-06
    Type: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Version format compliance