2NNI

CYP2C8dH complexed with montelukast

Structural Biology Knowledgebase: 2NNI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NNI

Classification: OXIDOREDUCTASE ELECTRON TRANSPORT

Total Structure Weight: 55610.00

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome P450 2C8 A 476 Homo sapiens EC#: 1.14.14.1 IUBMB
Gene Name(s): CYP2C8 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MTK
Query on MTK

A MONTELUKAST
2-[1-[[(1R)-1-[3-[(E)-2-(7-chloroquinolin- 2-yl)ethenyl]phenyl]-3-[2-(2-hydroxypropan- 2-yl)phenyl]propyl]sulfanylmethyl]cyclopropyl]ethanoic acid (Synonym)
C35 H36 Cl N O3 S
UCHDWCPVSPXUMX-TZIWLTJVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLM
Query on PLM

A PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.227
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.14 α = 90.00
b = 140.52 β = 90.00
c = 164.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-24
  • Released Date: 2007-10-23
  • Deposition author(s): Schoch, G.A., Yano, J.K., Stout, C.D., Johnson, E.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update