2MF8

HADDOCK model of MyT1 F4F5 - DNA complex

Structural Biology Knowledgebase: 2MF8 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2MF8

Classification: METAL BINDING PROTEIN / DNA

Total Structure Weight: 17652.97


Macromolecule Entities
Molecule Chains Length Organism Details
Myelin transcription factor 1 A 93 Mus musculus Fragment: UNP residues 792-880
Mutation: K793F, K879R
Gene Name(s): Myt1 Kiaa0835 Nzf2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*CP*CP*GP*AP*AP*AP*GP*TP*TP*CP*AP*C)-3') B 13 synthetic
DNA (5'-D(*GP*TP*GP*AP*AP*CP*TP*TP*TP*CP*GP*GP*T)-3') C 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-08
  • Released Date: 2013-11-06
  • Deposition author(s): Gamsjaeger, R., O'Connell, M.R., Cubeddu, L., Shepherd, N.E., Lowry, J.A., Kwan, A.H., Vandevenne, M., Swanton, M.K., Matthews, J.M., Mackay, J.P.

Revision History

  • 2013-12-25
    Type: Citation | Details: Citation update