2JIU

Crystal structure of EGFR kinase domain T790M mutation in complex with AEE788


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 2JIU

Classification: TRANSFERASE

Total Structure Weight: 75283.19

Macromolecule Entities
Molecule Chains Length Organism Details
EPIDERMAL GROWTH FACTOR RECEPTOR A, B 328 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 695-1022
Mutation: T790M
Details: EGFR 696-1022 T790M
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AEE
Query on AEE

A 6-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]PHENYL}- N-[(1R)-1-PHENYLETHYL]-7H-PYRROLO[2,3-D]PYRIMIDIN- 4-AMINE
C27 H32 N6
OONFNUWBHFSNBT-HXUWFJFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AEE IC50: 2 nM (99) BindingDB
Kd: 1.1 - 27.6 nM (99 - 100) BindingDB

N/A in BindingMoad
Kd: 27.6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.211
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.40 α = 90.00
b = 88.64 β = 90.00
c = 164.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-01
  • Released Date: 2008-01-22
  • Deposition author(s): Yun, C.-H., Mengwasser, K.E., Toms, A.V., Woo, M.S., Greulich, H., Wong, K.-K., Meyerson, M., Eck, M.J.

Revision History

  • Version 1_0: 2008-01-22

    Type: Initial release

  • Version 1_1: 2011-05-07

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance