1W8C

CO-CRYSTAL STRUCTURE OF 6-CYCLOHEXYLMETHOXY-8-ISOPROPYL-9H-PURIN-2- YLAMINE AND MONOMERIC CDK2

Structural Biology Knowledgebase: 1W8C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1W8C

Classification: TRANSFERASE

Total Structure Weight: 34324.23

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A 299 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
N69
Query on N69

A 6-(CYCLOHEXYLMETHOXY)-8-ISOPROPYL-9H-PURIN- 2-AMINE
INHIBITOR OF CDK2 (Synonym)
C15 H23 N5 O
JABXNQUXGJTKRO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.196
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.51 α = 90.00
b = 71.93 β = 90.00
c = 72.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-20
  • Released Date: 2006-08-30
  • Deposition author(s): Pratt, D.J., Endicott, J.A., Noble, M.E.M.

Revision History

  • 2014-11-05
    Type: Linkage | Details: LINK
  • 2014-11-05
    Type: Other | Details: MODRES
  • 2014-11-05
    Type: Polymer description | Details: SEQRES
  • 2014-11-05
    Type: Non-polymer description | Details: HET, HETSYN, FORMUL, HETNAM
  • 2014-11-05
    Type: Geometry validation | Details: REMARK 500
  • 2014-11-05
    Type: Atom nomenclature | Details: HETATM
  • 2014-01-22
    Type: Citation | Details: JRNL
  • 2013-12-18
    Type: Other | Details: REMARK 525,REMARK 280,REMARK 900
  • 2013-12-18
    Type: Source and taxonomy | Details: SOURCE
  • 2013-12-18
    Type: Geometry validation | Details: REMARK 500
  • 2013-12-18
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM
  • 2013-12-18
    Type: Citation | Details: JRNL
  • 2013-12-18
    Type: Function and keywords | Details: KEYWDS
  • 2013-12-18
    Type: Version format compliance | Details: REMARK 4
  • 2013-12-18
    Type: Biological assembly | Details: REMARK 300,REMARK 350