NMR Ensemble

1O4X

TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT

Structural Biology Knowledgebase: 1O4X SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 1
  • Selection Criteria: Regularized Mean Structure

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1O4X

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 41447.21


Macromolecule Entities
Molecule Chains Length Organism Details
transcription factor Oct-1 A 167 Homo sapiens Mutation: C65A
Gene Name(s): POU2F1 Gene View OCT1 OTF1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Transcription factor SOX-2 B 88 Homo sapiens Gene Name(s): SOX2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' C 19 synthetic
5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3' D 19 synthetic


Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 1
  • Selection Criteria: REGULARIZED MEAN STRUCTURE

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-17
  • Released Date: 2004-01-27
  • Deposition author(s): Clore, G.M., Williams, D.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4