1LQD

CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 45.

Structural Biology Knowledgebase: 1LQD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1LQD

Classification: HYDROLASE

Total Structure Weight: 44226.26

Macromolecule Entities
Molecule Chains Length Organism Details
Blood coagulation factor Xa A 134 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: light chain
Gene Name(s): F10 Gene View
Blood coagulation factor Xa B 254 Homo sapiens EC#: 3.4.21.6 IUBMB
Gene Name(s): F10 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CMI
Query on CMI

B 1-(3-CARBAMIMIDOYL-BENZYL)-4-METHYL-1H-INDOLE- 2-CARBOXYLIC ACID 3,5-DIMETHYL-BENZYLAMIDE
C27 H28 N4 O
JSQZLEYFOOSZPU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CMI Ki: 9 nM (100) BindingDB

N/A in BindingMoad
Ki: 9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.161
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.66 α = 90.00
b = 72.40 β = 90.00
c = 78.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-10
  • Released Date: 2003-05-10
  • Deposition author(s): Schreuder, H.A., Loenze, P., Brachvogel, V., Liesum, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4