1E4H

Structure of human transthyretin complexed with bromophenols: a new mode of binding


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1E4H

Classification: TRANSPORT PROTEIN

Total Structure Weight: 28716.09

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSTHYRETIN A, B 127 Homo sapiens Mutation: Q63E
Gene Name(s): TTR Gene View PALB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PBR
Query on PBR

A, B PENTABROMOPHENOL
C6 H Br5 O
SVHOVVJFOWGYJO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PBR N/A in BindingDB
Kd: 3.9 nM  BindingMOAD
Kd: 3.9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.193
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 43.00 α = 90.00
b = 85.40 β = 90.00
c = 64.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-04
  • Released Date: 2000-08-29
  • Deposition author(s): Ghosh, M., Meerts, I.A.T.M., Cook, A., Bergman, A., Brouwer, A., Johnson, L.N.

Revision History

  • Version 1_0: 2000-08-29

    Type: Initial release

  • Version 1_1: 2011-09-21

    Type: Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance

  • Version 1_2: 2017-07-05

    Type: Data collection