1DYO

XYLAN-BINDING DOMAIN FROM CBM 22, FORMALLY X6B DOMAIN

Structural Biology Knowledgebase: 1DYO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1DYO

Classification: CARBOHYDRATE-BINDING MODULE

Total Structure Weight: 35804.94

Macromolecule Entities
Molecule Chains Length Organism Details
ENDO-1,4-BETA-XYLANASE Y A, B 160 Ruminiclostridium thermocellum EC#: 3.2.1.8 IUBMB
Fragment: XYLAN-BINDING DOMAIN
Gene Name(s): xynY
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.190
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 89.49 α = 90.00
b = 89.49 β = 90.00
c = 207.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-02-03
  • Released Date: 2000-07-04
  • Deposition author(s): Davies, G.J., Charnock, S.J., Gilbert, H.J., Fontes, C.M.G.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4