1DTQ

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH PETT-1 (PETT131A94)

Structural Biology Knowledgebase: 1DTQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DTQ

Classification: HYDROLASE / TRANSFERASE

Total Structure Weight: 116340.72

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 RT A-CHAIN A 560 Human immunodeficiency virus 1 Fragment: P66
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HIV-1 RT B-CHAIN B 440 Human immunodeficiency virus 1 Fragment: P51
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FPT
Query on FPT

A N-[[3-FLUORO-4-ETHOXY-PYRID-2-YL]ETHYL]-N'- [5-NITRILOMETHYL-PYRIDYL]-THIOUREA
C16 H16 F N5 O S
PQSCCWFMTRVFDA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FPT N/A in BindingDB
N/A in BindingMoad
IC50: 6 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.224
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 137.10 α = 90.00
b = 115.00 β = 90.00
c = 65.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-13
  • Released Date: 2000-03-20
  • Deposition author(s): Ren, J., Diprose, J., Warren, J., Esnouf, R.M., Bird, L.E., Ikemizu, S., Slater, M., Milton, J., Balzarini, J., Stuart, D.I., Stammers, D.K.

Revision History

  • 2014-11-12
    Type: Other | Details: update modified residue CSW to CSD
  • 2014-11-12
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4