1BJQ

THE DOLICHOS BIFLORUS SEED LECTIN IN COMPLEX WITH ADENINE

Structural Biology Knowledgebase: 1BJQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1BJQ

Classification: GLYCOPROTEIN

Total Structure Weight: 218763.44

Macromolecule Entities
Molecule Chains Length Organism Details
LECTIN A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 253 Vigna unguiculata Mutation: F127L
Details: DOLICHOS BIFLORUS SEED LECTIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADE
Query on ADE

A, B, C, D, E, F, G, H ADENINE
C5 H5 N5
GFFGJBXGBJISGV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F, G, H MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E, F, G, H CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.38 α = 90.00
b = 116.14 β = 90.00
c = 224.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-06-26
  • Released Date: 1998-12-30
  • Deposition author(s): Hamelryck, T.W., Loris, R., Bouckaert, J., Dao-Thi, M.H., Wyns, L., Etzler, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4