8ICZ

DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR)


Structural Similarities for the Entities in PDB 8ICZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains T

Description: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3') dna | Length: 8

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains P

Description: DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3') dna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)) protein | Length: 335

No structure alignment results are available for 8ICZ.A explicitly.

It is represented by chain 4KLI.A which is 100% sequence identical.

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View how chain 8ICZ.A compares with the representative chain PDP:4KLIAa. Select a comparison method:


References