Structural Similarities for the Entities in PDB 6FLP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: DNA-directed RNA polymerase subunit alpha protein | Length: 329

No structure alignment results are available for 6FLP.A, 6FLP.B explicitly.

These chains are represented by chain 2A6H.a which has more than 40% sequence identity.

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Entity #2 | Chains C

Description: DNA-directed RNA polymerase subunit beta protein | Length: 1342

No structure alignment results are available for 6FLP.C explicitly.

It is represented by chain 2A6H.c which has more than 70% sequence identity.

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Entity #3 | Chains D

Description: DNA-directed RNA polymerase subunit beta' protein | Length: 1407

No structure alignment results are available for 6FLP.D explicitly.

It is represented by chain 2A6H.d which has more than 40% sequence identity.

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Entity #4 | Chains E

Description: DNA-directed RNA polymerase subunit omega protein | Length: 91

No structure alignment results are available for 6FLP.E explicitly.

It is represented by chain 4YG2.E which is 100% sequence identical.

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Entity #5 | Chains N

Description: DNA (30-MER) dna | Length: 31

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains R

Description: RNA (5'-R(P*GP*AP*UP*GP*UP*GP*UP*GP*CP*U)-3') rna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains T

Description: DNA (39-MER) dna | Length: 39

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References