Structural Similarities for the Entities in PDB 6EPD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A

Description: Proteasome subunit alpha type-6 protein | Length: 246

No structure alignment results are available for 6EPD.A explicitly.

It is represented by chain 5LE5.G which is 100% sequence identical.

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Entity #10 | Chains 3

Description: Proteasome subunit beta type-3 protein | Length: 205

No structure alignment results are available for 6EPD.3 explicitly.

It is represented by chain 5LE5.I which is 100% sequence identical.

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Entity #11 | Chains 4

Description: Proteasome subunit beta type-2 protein | Length: 201

No structure alignment results are available for 6EPD.4 explicitly.

It is represented by chain 5LE5.J which is 100% sequence identical.

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Entity #12 | Chains 5

Description: Proteasome subunit beta type-5 protein | Length: 263

No structure alignment results are available for 6EPD.5 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains 6

Description: Proteasome subunit beta type-1 protein | Length: 240

No structure alignment results are available for 6EPD.6 explicitly.

It is represented by chain 5LE5.L which has more than 40% sequence identity.

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Entity #14 | Chains 7

Description: Proteasome subunit beta type-4 protein | Length: 263

No structure alignment results are available for 6EPD.7 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains W

Description: 26S proteasome subunit S5a protein | Length: 377

No structure alignment results are available for 6EPD.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains V

Description: Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 protein | Length: 310

No structure alignment results are available for 6EPD.V explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains T

Description: Proteasome 26S subunit, non-ATPase 8 protein | Length: 353

No structure alignment results are available for 6EPD.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains Y

Description: RCG28037 protein | Length: 70

No structure alignment results are available for 6EPD.Y explicitly.

It is represented by chain 3T5X.B which is 100% sequence identical.

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Entity #19 | Chains Z

Description: 26S proteasome non-ATPase regulatory subunit 2 protein | Length: 908

No structure alignment results are available for 6EPD.Z explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #2 | Chains B

Description: Proteasome subunit alpha type-2 protein | Length: 234

No structure alignment results are available for 6EPD.B explicitly.

It is represented by chain 5LE5.A which is 100% sequence identical.

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Entity #20 | Chains N

Description: 26S proteasome non-ATPase regulatory subunit 1 protein | Length: 953

No structure alignment results are available for 6EPD.N explicitly.

It is represented by chain 4ADY.A which has more than 40% sequence identity.

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Entity #21 | Chains S

Description: Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 protein | Length: 530

No structure alignment results are available for 6EPD.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains P

Description: Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 12 protein | Length: 456

No structure alignment results are available for 6EPD.P explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #23 | Chains Q

Description: 26S proteasome non-ATPase regulatory subunit 11 protein | Length: 422

No structure alignment results are available for 6EPD.Q explicitly.

It is represented by chain 3TXN.A which has more than 70% sequence identity.

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Entity #24 | Chains R

Description: Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6 protein | Length: 389

No structure alignment results are available for 6EPD.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains U

Description: Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 7 (Predicted) protein | Length: 320

No structure alignment results are available for 6EPD.U explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #26 | Chains O

Description: 26S proteasome non-ATPase regulatory subunit 13 protein | Length: 376

No structure alignment results are available for 6EPD.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains H

Description: 26S proteasome regulatory subunit 7 protein | Length: 433

No structure alignment results are available for 6EPD.H explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #28 | Chains I

Description: 26S proteasome regulatory subunit 4 protein | Length: 440

No structure alignment results are available for 6EPD.I explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains K

Description: 26S proteasome regulatory subunit 6B protein | Length: 418

No structure alignment results are available for 6EPD.K explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains C

Description: Proteasome subunit alpha type-4 protein | Length: 261

No structure alignment results are available for 6EPD.C explicitly.

It is represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #30 | Chains L

Description: Proteasome 26S subunit, ATPase 6 protein | Length: 403

No structure alignment results are available for 6EPD.L explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #31 | Chains M

Description: 26S proteasome regulatory subunit 6A protein | Length: 442

No structure alignment results are available for 6EPD.M explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #32 | Chains J

Description: 26S proteasome regulatory subunit 8 protein | Length: 406

No structure alignment results are available for 6EPD.J explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains D

Description: Proteasome subunit alpha type-7 protein | Length: 254

No structure alignment results are available for 6EPD.D explicitly.

It is represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #5 | Chains E

Description: Proteasome subunit alpha type-5 protein | Length: 241

No structure alignment results are available for 6EPD.E explicitly.

It is represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #6 | Chains F

Description: Proteasome subunit alpha type-1 protein | Length: 263

No structure alignment results are available for 6EPD.F explicitly.

It is represented by chain 5LE5.E which is 100% sequence identical.

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Entity #7 | Chains G

Description: Proteasome subunit alpha type-3 protein | Length: 255

No structure alignment results are available for 6EPD.G explicitly.

It is represented by chain 5LE5.F which is 100% sequence identical.

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Entity #8 | Chains 1

Description: Proteasome subunit beta type-6 protein | Length: 238

No structure alignment results are available for 6EPD.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains 2

Description: Proteasome subunit beta type-7 protein | Length: 277

No structure alignment results are available for 6EPD.2 explicitly.

It is represented by chain 5LE5.H which has more than 50% sequence identity.

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References