Effects of myosin variants on interacting-heads motif explain distinct hypertrophic and dilated cardiomyopathy phenotypes.

Alamo, L; Ware, J.S; Pinto, A; Gillilan, R.E; Seidman, J.G; Seidman, C.E; Padron, R.

Structural Similarities for the Entities in PDB 5TBY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: Myosin-7 protein | Length: 1935

Entity #2 | Chains C,D

Description: Myosin light chain 3 protein | Length: 195

No structure alignment results are available for 5TBY.C, 5TBY.D explicitly.

These chains are represented by chain XXXX.null which has more than 90% sequence identity.

Show structure comparison results for representative XXXX.null

Entity #3 | Chains E,F

Description: Myosin regulatory light chain 2, ventricular/cardiac muscle isoform protein | Length: 166

No structure alignment results are available for 5TBY.E, 5TBY.F explicitly.

These chains are represented by chain 1EXR.a which has more than 40% sequence identity.

Show structure comparison results for representative 1EXR.a

References

[1] Andreas Prlić; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985
[2] The all vs. all comparisons are based on jFATCAT (a Java port of the original FATCAT algorithm Yuzhen Ye & Adam Godzik (2003))
Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Bioinformatics vol.19 suppl. 2. ii246-ii255.

[3] Andreeva A., Howorth D., Chandonia J.-M., Brenner S.E., Hubbard T.J.P., Chothia C., Murzin A.G. (2008).
Data growth and its impact on the SCOP database: new developments.
Nucl. Acids Res. 2008 36: D419-D425
[4] Alexandrov N., Shindyalov I. (2003)
PDP: protein domain parser.
Bioinformatics 2003 Feb;19(3);429-30.

139555 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

5TBY

HUMAN BETA CARDIAC HEAVY MEROMYOSIN INTERACTING-HEADS MOTIF OBTAINED BY HOMOLOGY MODELING (USING SWISS-MODEL) OF HUMAN SEQUENCE FROM APHONOPELMA HOMOLOGY MODEL (PDB-3JBH), RIGIDLY FITTED TO HUMAN BETA-CARDIAC NEGATIVELY STAINED THICK FILAMENT 3D-RECONSTRUCTION (EMD-2240)

Structural Similarities for the Entities in PDB 5TBY

Info & Help Documentation

No structure alignment results are available for 5TBY.C, 5TBY.D explicitly.

No structure alignment results are available for 5TBY.E, 5TBY.F explicitly.

References

Prepare Data

Validate Data

Deposit Data

Deposition Help & Resources

139555 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

5TBY

HUMAN BETA CARDIAC HEAVY MEROMYOSIN INTERACTING-HEADS MOTIF OBTAINED BY HOMOLOGY MODELING (USING SWISS-MODEL) OF HUMAN SEQUENCE FROM APHONOPELMA HOMOLOGY MODEL (PDB-3JBH), RIGIDLY FITTED TO HUMAN BETA-CARDIAC NEGATIVELY STAINED THICK FILAMENT 3D-RECONSTRUCTION (EMD-2240)

Structural Similarities for the Entities in PDB 5TBY

Info & Help Documentation

No structure alignment results are available for 5TBY.C, 5TBY.D explicitly.

No structure alignment results are available for 5TBY.E, 5TBY.F explicitly.

References