Structural Similarities for the Entities in PDB 5T4O

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C

Description: ATP synthase subunit alpha protein | Length: 513

No structure alignment results are available for 5T4O.A, 5T4O.B, 5T4O.C explicitly.

These chains are represented by chain 2JDI.a which has more than 50% sequence identity.

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Entity #2 | Chains D,E,F

Description: ATP synthase subunit beta protein | Length: 471

No structure alignment results are available for 5T4O.D, 5T4O.E, 5T4O.F explicitly.

These chains are represented by chain 2JDI.d which has more than 70% sequence identity.

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Entity #3 | Chains G

Description: ATP synthase gamma chain protein | Length: 287

No structure alignment results are available for 5T4O.G explicitly.

It is represented by chain 2JDI.g which has more than 40% sequence identity.

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Entity #4 | Chains H

Description: ATP synthase epsilon chain protein | Length: 139

No structure alignment results are available for 5T4O.H explicitly.

It is represented by chain 1FS0.e which is 100% sequence identical.

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Entity #5 | Chains I,J

Description: ATP synthase subunit b protein | Length: 155

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Entity #6 | Chains K

Description: ATP synthase subunit a protein | Length: 271

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Entity #7 | Chains L

Description: ATP synthase subunit delta protein | Length: 177

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Entity #8 | Chains M,N,O,P,Q,R,S,T,U,V

Description: ATP synthase subunit c protein | Length: 79

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References