Structural Similarities for the Entities in PDB 5ELS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F

Description: KH domain-containing, RNA-binding, signal transduction-associated protein 3 protein | Length: 113

No structure alignment results are available for 5ELS.A, 5ELS.B, 5ELS.C, 5ELS.D, 5ELS.E, 5ELS.F explicitly.

These chains are represented by chain 5EL3.A which is 100% sequence identical.

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View how chain 5ELS.F compares with the representative chain PDP:5EL3Aa. Select a comparison method:


Entity #2 | Chains H,I

Description: RNA (5'-R(P*AP*AP*AP*UP*AP*A)-3') rna | Length: 6

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References