The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
You can also use the structure comparison tool to compare any 2 given structures
Description: CRISPR system Cascade subunit CasE protein | Length: 199
These chains are represented by chain 4DZD.A which is 100% sequence identical.
View how chain 5CD4.M compares with the representative chain PDP:4DZDAa. Select a comparison method:
Description: CRISPR system Cascade subunit CasC protein | Length: 363
These chains are represented by chain 5H9F.D which is 100% sequence identical.
View how chain 5CD4.S compares with the representative chain PDP:5H9FDa. Select a comparison method:
Description: CRISPR system Cascade subunit CasD protein | Length: 224
These chains are represented by chain 5H9F.J which is 100% sequence identical.
View how chain 5CD4.T compares with the representative chain PDP:5H9FJa. Select a comparison method:
Description: CRISPR system Cascade subunit CasA protein | Length: 502
These chains are represented by chain 5H9F.A which is 100% sequence identical.
View how chain 5CD4.U compares with the representative chain PDP:5H9FAa. Select a comparison method:
Description: CRISPR system Cascade subunit CasB protein | Length: 165
These chains are represented by chain 5H9F.B which is 100% sequence identical.
View how chain 5CD4.W compares with the representative chain PDP:5H9FBa. Select a comparison method:
Description: crRNA rna | Length: 61
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.