Structural Similarities for the Entities in PDB 4YUU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A1,A2,a1,a2

Description: Photosystem II protein D1 protein | Length: 344

No structure alignment results are available for 4YUU.A1, 4YUU.A2, 4YUU.a1, 4YUU.a2 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #10 | Chains K1,K2,k1,k2

Description: Photosystem II reaction center protein K protein | Length: 41

No structure alignment results are available for 4YUU.K1, 4YUU.K2, 4YUU.k1, 4YUU.k2 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #11 | Chains L1,L2,l1,l2

Description: Photosystem II reaction center protein L protein | Length: 38

No structure alignment results are available for 4YUU.L1, 4YUU.L2, 4YUU.l1, 4YUU.l2 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #12 | Chains M1,M2,m1,m2

Description: PHOTOSYSTEM II REACTION CENTER PROTEIN M protein | Length: 108

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Entity #13 | Chains O1,O2,o1,o2

Description: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO protein | Length: 329

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Entity #14 | Chains T1,T2,t1,t2

Description: Photosystem II reaction center protein T protein | Length: 32

No structure alignment results are available for 4YUU.T1, 4YUU.T2, 4YUU.t1, 4YUU.t2 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains U1,U2,u1,u2

Description: Photosystem II 12 kDa extrinsic protein, chloroplastic protein | Length: 155

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Entity #16 | Chains V1,V2,v1,v2

Description: Cytochrome c-550 protein | Length: 155

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Entity #17 | Chains Y1,Y2,y1,y2

Description: Photosystem II reaction center protein Ycf12 protein | Length: 35

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Entity #18 | Chains X1,X2,x1,x2

Description: PHOTOSYSTEM II REACTION CENTER PROTEIN X protein | Length: 40

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Entity #19 | Chains S1,S2,s1,s2

Description: PEPTIDE CHAIN UNASSIGNED protein | Length: 46

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Entity #2 | Chains B1,B2,b1,b2

Description: Photosystem II CP47 reaction center protein protein | Length: 509

No structure alignment results are available for 4YUU.B1, 4YUU.B2, 4YUU.b1, 4YUU.b2 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #20 | Chains W1,W2,w1,w2

Description: PEPTIDE CHAIN UNASSIGNED protein | Length: 25

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Entity #21 | Chains Q2,q1

Description: Extrinsic protein in photosystem II protein | Length: 218

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Entity #22 | Chains Z2,z2

Description: Photosystem II reaction center protein Z protein | Length: 62

No structure alignment results are available for 4YUU.Z2, 4YUU.z2 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains C1,C2,c1,c2

Description: Photosystem II CP43 reaction center protein protein | Length: 460

No structure alignment results are available for 4YUU.C1, 4YUU.C2, 4YUU.c1, 4YUU.c2 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains D1,D2,d1,d2

Description: Photosystem II D2 protein protein | Length: 351

No structure alignment results are available for 4YUU.D1, 4YUU.D2, 4YUU.d1, 4YUU.d2 explicitly.

These chains are represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #5 | Chains E1,E2,e1,e2

Description: Cytochrome b559 subunit alpha protein | Length: 84

No structure alignment results are available for 4YUU.E1, 4YUU.E2, 4YUU.e1, 4YUU.e2 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains F1,F2,f1,f2

Description: Cytochrome b559 subunit beta protein | Length: 43

No structure alignment results are available for 4YUU.F1, 4YUU.F2, 4YUU.f1, 4YUU.f2 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains H1,H2,h1,h2

Description: Photosystem II reaction center protein H protein | Length: 67

No structure alignment results are available for 4YUU.H1, 4YUU.H2, 4YUU.h1, 4YUU.h2 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains I1,I2,i1,i2

Description: Photosystem II reaction center protein I protein | Length: 38

No structure alignment results are available for 4YUU.I1, 4YUU.I2, 4YUU.i1, 4YUU.i2 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #9 | Chains J1,J2,j1,j2

Description: Photosystem II reaction center protein J protein | Length: 39

No structure alignment results are available for 4YUU.J1, 4YUU.J2, 4YUU.j1, 4YUU.j2 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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References