4V9F

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins


Structural Similarities for the Entities in PDB 4V9F

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 0

Description: 23S Ribosomal RNA rna | Length: 2910

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains H

Description: 50S ribosomal protein L10e protein | Length: 177

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Entity #11 | Chains I

Description: 50S ribosomal protein L11P protein | Length: 162

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Entity #12 | Chains J

Description: 50S ribosomal protein L13P protein | Length: 145

No structure alignment results are available for 4V9F.J explicitly.

It is represented by chain 1J3A.a which has more than 40% sequence identity.

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Entity #13 | Chains K

Description: 50S ribosomal protein L14P protein | Length: 132

No structure alignment results are available for 4V9F.K explicitly.

It is represented by chain 1WHI.a which has more than 40% sequence identity.

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Entity #14 | Chains L

Description: 50S ribosomal protein L15P protein | Length: 165

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Entity #15 | Chains M

Description: 50S ribosomal protein L15e protein | Length: 196

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Entity #16 | Chains N

Description: 50S ribosomal protein L18P protein | Length: 187

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Entity #17 | Chains O

Description: 50S ribosomal protein L18e protein | Length: 116

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Entity #18 | Chains P

Description: 50S ribosomal protein L19e protein | Length: 149

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Entity #19 | Chains Q

Description: 50S ribosomal protein L21e protein | Length: 96

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Entity #2 | Chains 9

Description: 5S Ribosomal RNA rna | Length: 122

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains R

Description: 50S ribosomal protein L22P protein | Length: 155

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Entity #21 | Chains S

Description: 50S ribosomal protein L23P protein | Length: 85

No structure alignment results are available for 4V9F.S explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #22 | Chains T

Description: 50S ribosomal protein L24P protein | Length: 120

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Entity #23 | Chains U

Description: 50S ribosomal protein L24e protein | Length: 67

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Entity #24 | Chains V

Description: 50S ribosomal protein L29P protein | Length: 71

No structure alignment results are available for 4V9F.V explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #25 | Chains W

Description: 50S ribosomal protein L30P protein | Length: 154

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Entity #26 | Chains X

Description: 50S ribosomal protein L31e protein | Length: 92

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Entity #27 | Chains Y

Description: 50S ribosomal protein L32e protein | Length: 241

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Entity #28 | Chains Z

Description: 50S ribosomal protein L37Ae protein | Length: 92

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Entity #29 | Chains 1

Description: 50S ribosomal protein L37e protein | Length: 57

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Entity #3 | Chains A

Description: 50S ribosomal protein L2P protein | Length: 240

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Entity #30 | Chains 2

Description: 50S ribosomal protein L39e protein | Length: 50

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Entity #31 | Chains 3

Description: 50S ribosomal protein L44e protein | Length: 92

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Entity #32 | Chains 4,5

Description: 50S ribosomal protein L12 protein | Length: 70

Entity #33 | Chains 6

Description: 50S ribosomal protein LX protein | Length: 56

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Entity #4 | Chains B

Description: 50S ribosomal protein L3P protein | Length: 338

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Entity #5 | Chains C

Description: 50S ribosomal protein L4P protein | Length: 246

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Entity #6 | Chains D

Description: 50S ribosomal protein L5P protein | Length: 177

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Entity #7 | Chains E

Description: 50S ribosomal protein L6P protein | Length: 178

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Entity #8 | Chains F

Description: 50S ribosomal protein L7Ae protein | Length: 120

No structure alignment results are available for 4V9F.F explicitly.

It is represented by chain 1XBI.a which has more than 50% sequence identity.

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Entity #9 | Chains G

Description: 50S ribosomal protein L10E protein | Length: 255

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References