Structural Similarities for the Entities in PDB 4Q4Z

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: DNA-directed RNA polymerase subunit alpha protein | Length: 315

No structure alignment results are available for 4Q4Z.A, 4Q4Z.B explicitly.

These chains are represented by chain 2A6H.a which is 100% sequence identical.

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View how chain 4Q4Z.B compares with the representative chain d2a6ha1. Select a comparison method:


Entity #2 | Chains C

Description: DNA-directed RNA polymerase subunit beta protein | Length: 1119

No structure alignment results are available for 4Q4Z.C explicitly.

It is represented by chain 2A6H.c which is 100% sequence identical.

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View how chain 4Q4Z.C compares with the representative chain d2a6hc1. Select a comparison method:


Entity #3 | Chains D

Description: DNA-directed RNA polymerase subunit beta' protein | Length: 1524

No structure alignment results are available for 4Q4Z.D explicitly.

It is represented by chain 2A6H.d which is 100% sequence identical.

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View how chain 4Q4Z.D compares with the representative chain d2a6hd1. Select a comparison method:


Entity #4 | Chains E

Description: DNA-directed RNA polymerase subunit omega protein | Length: 99

No structure alignment results are available for 4Q4Z.E explicitly.

It is represented by chain 2A6H.e which has more than 95% sequence identity.

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Entity #5 | Chains F

Description: RNA polymerase sigma factor SigA protein | Length: 423

No structure alignment results are available for 4Q4Z.F explicitly.

It is represented by chain 2A6H.f which has more than 95% sequence identity.

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Entity #6 | Chains G

Description: DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*GP*CP*CP*A)-3') dna | Length: 22

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains H

Description: DNA (25-MER) dna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References