Structural Similarities for the Entities in PDB 4OO1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Exosome complex component RRP45 protein | Length: 305

No structure alignment results are available for 4OO1.A explicitly.

It is represented by chain 4IFD.A which is 100% sequence identical.

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Entity #10 | Chains J

Description: Exosome complex exonuclease RRP6 protein | Length: 560

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Entity #11 | Chains S

Description: POLY A RNA rna | Length: 24

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: Exosome complex component SKI6 protein | Length: 250

No structure alignment results are available for 4OO1.B explicitly.

It is represented by chain 4IFD.B which is 100% sequence identical.

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Entity #3 | Chains C

Description: Exosome complex component RRP43 protein | Length: 394

No structure alignment results are available for 4OO1.C explicitly.

It is represented by chain 4IFD.C which has more than 95% sequence identity.

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Entity #4 | Chains D

Description: Exosome complex component RRP46 protein | Length: 225

No structure alignment results are available for 4OO1.D explicitly.

It is represented by chain 4IFD.D which is 100% sequence identical.

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Entity #5 | Chains E

Description: Exosome complex component RRP42 protein | Length: 269

No structure alignment results are available for 4OO1.E explicitly.

It is represented by chain 4IFD.E which has more than 95% sequence identity.

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Entity #6 | Chains F

Description: Exosome complex component MTR3 protein | Length: 250

No structure alignment results are available for 4OO1.F explicitly.

It is represented by chain 4IFD.F which has more than 95% sequence identity.

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Entity #7 | Chains G

Description: Exosome complex component RRP40 protein | Length: 244

No structure alignment results are available for 4OO1.G explicitly.

It is represented by chain 4IFD.G which is 100% sequence identical.

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Entity #8 | Chains H

Description: Exosome complex component RRP4 protein | Length: 363

No structure alignment results are available for 4OO1.H explicitly.

It is represented by chain 4IFD.H which is 100% sequence identical.

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Entity #9 | Chains I

Description: Exosome complex component CSL4 protein | Length: 296

No structure alignment results are available for 4OO1.I explicitly.

It is represented by chain 4IFD.I which is 100% sequence identical.

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References