Structural Similarities for the Entities in PDB 4OLA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Feb-09-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Protein argonaute-2 protein | Length: 859

No structure alignment results are available for 4OLA.A explicitly.

It is represented by chain 4Z4D.A which is 100% sequence identical.

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View how chain 4OLA.A compares with the representative chain PDP:4Z4DAa. Select a comparison method:


Entity #2 | Chains B

Description: 5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*U)-3' rna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References