Structural Similarities for the Entities in PDB 4MGT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-28-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 protein | Length: 205

No structure alignment results are available for 4MGT.A explicitly.

It is represented by chain 3S57.A which has more than 95% sequence identity.

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View how chain 4MGT.A compares with the representative chain PDP:3S57Aa. Select a comparison method:


Entity #2 | Chains B

Description: DNA1 dna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: DNA2 dna | Length: 13

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References