Structural Similarities for the Entities in PDB 4M7A

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,H

Description: U6 snRNA-associated Sm-like protein LSm8 protein | Length: 96

No structure alignment results are available for 4M7A.A, 4M7A.H explicitly.

These chains are represented by chain 4M7D.A which is 100% sequence identical.

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View how chain 4M7A.H compares with the representative chain PDP:4M7DAa. Select a comparison method:


Entity #2 | Chains B,I

Description: U6 snRNA-associated Sm-like protein LSm2 protein | Length: 95

No structure alignment results are available for 4M7A.B, 4M7A.I explicitly.

These chains are represented by chain 4M7D.B which is 100% sequence identical.

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View how chain 4M7A.I compares with the representative chain PDP:4M7DBa. Select a comparison method:


Entity #3 | Chains C,J

Description: U6 snRNA-associated Sm-like protein LSm3 protein | Length: 89

No structure alignment results are available for 4M7A.C, 4M7A.J explicitly.

These chains are represented by chain 4C92.C which has more than 95% sequence identity.

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View how chain 4M7A.J compares with the representative chain PDP:4C92Ca. Select a comparison method:


Entity #4 | Chains D,K

Description: U6 snRNA-associated Sm-like protein LSm6 protein | Length: 86

No structure alignment results are available for 4M7A.D, 4M7A.K explicitly.

These chains are represented by chain 4C92.F which is 100% sequence identical.

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View how chain 4M7A.K compares with the representative chain PDP:4C92Fa. Select a comparison method:


Entity #5 | Chains E,L

Description: U6 snRNA-associated Sm-like protein LSm5 protein | Length: 93

No structure alignment results are available for 4M7A.E, 4M7A.L explicitly.

These chains are represented by chain 4C92.E which is 100% sequence identical.

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Entity #6 | Chains F,M

Description: U6 snRNA-associated Sm-like protein LSm7 protein | Length: 115

No structure alignment results are available for 4M7A.F, 4M7A.M explicitly.

These chains are represented by chain 4C92.G which is 100% sequence identical.

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Entity #7 | Chains G,N

Description: U6 snRNA-associated Sm-like protein LSm4 protein | Length: 93

No structure alignment results are available for 4M7A.G, 4M7A.N explicitly.

These chains are represented by chain 4M7D.G which is 100% sequence identical.

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Entity #8 | Chains O,P

Description: U6 snRNA rna | Length: 8

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References