Structural Similarities for the Entities in PDB 4LD9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E

Description: Histone H3.2 protein | Length: 136

No structure alignment results are available for 4LD9.A, 4LD9.E explicitly.

These chains are represented by chain 1TZY.C which is 100% sequence identical.

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Entity #2 | Chains B,F

Description: Histone H4 protein | Length: 103

No structure alignment results are available for 4LD9.B, 4LD9.F explicitly.

These chains are represented by chain 1TZY.D which is 100% sequence identical.

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Entity #3 | Chains C,G

Description: Histone H2A protein | Length: 130

No structure alignment results are available for 4LD9.C, 4LD9.G explicitly.

These chains are represented by chain 4CAY.A which has more than 50% sequence identity.

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Entity #4 | Chains D,H

Description: Histone H2B 1.1 protein | Length: 126

No structure alignment results are available for 4LD9.D, 4LD9.H explicitly.

These chains are represented by chain 1TZY.B which has more than 95% sequence identity.

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Entity #5 | Chains I

Description: Widom 601 sequence reverse dna | Length: 167

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains J

Description: Widom 601 sequence forward dna | Length: 167

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains K,L

Description: Regulatory protein SIR3 protein | Length: 236

No structure alignment results are available for 4LD9.K, 4LD9.L explicitly.

These chains are represented by chain 4KUI.A which is 100% sequence identical.

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References