Structural Similarities for the Entities in PDB 4L8R

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: HISTONE MRNA STEM-LOOP rna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B,E

Description: 3'-5' exoribonuclease 1 protein | Length: 303

No structure alignment results are available for 4L8R.B, 4L8R.E explicitly.

These chains are represented by chain 4QOZ.B which is 100% sequence identical.

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View how chain 4L8R.E compares with the representative chain PDP:4QOZBa. Select a comparison method:


Entity #3 | Chains C

Description: Histone RNA hairpin-binding protein protein | Length: 120

No structure alignment results are available for 4L8R.C explicitly.

It is represented by chain 4QOZ.C which is 100% sequence identical.

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View how chain 4L8R.C compares with the representative chain PDP:4QOZCa. Select a comparison method:


References