Structural Similarities for the Entities in PDB 4KZY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 40S Ribosomal Protein SA protein | Length: 295

No structure alignment results are available for 4KZY.A explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #10 | Chains J

Description: 40S Ribosomal Protein S9 protein | Length: 194

No structure alignment results are available for 4KZY.J explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #11 | Chains K

Description: 40S Ribosomal Protein S10 protein | Length: 165

No structure alignment results are available for 4KZY.K explicitly.

It is represented by chain 4KZZ.K which is 100% sequence identical.

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Entity #12 | Chains L

Description: 40S Ribosomal Protein S11 protein | Length: 158

No structure alignment results are available for 4KZY.L explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #13 | Chains M

Description: 40S Ribosomal Protein S12 protein | Length: 132

No structure alignment results are available for 4KZY.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains N

Description: 40S Ribosomal Protein S13 protein | Length: 151

No structure alignment results are available for 4KZY.N explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains O

Description: 40S Ribosomal Protein S14 protein | Length: 151

No structure alignment results are available for 4KZY.O explicitly.

It is represented by chain 4CVN.E which has more than 50% sequence identity.

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Entity #16 | Chains P

Description: 40S Ribosomal Protein S15 protein | Length: 145

No structure alignment results are available for 4KZY.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains Q

Description: 40S Ribosomal Protein S16 protein | Length: 146

No structure alignment results are available for 4KZY.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains R

Description: 40S Ribosomal Protein S17 protein | Length: 135

No structure alignment results are available for 4KZY.R explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains S

Description: 40S Ribosomal Protein S18 protein | Length: 152

No structure alignment results are available for 4KZY.S explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains B

Description: 40S Ribosomal Protein S3A protein | Length: 264

No structure alignment results are available for 4KZY.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains T

Description: 40S Ribosomal Protein S19 protein | Length: 145

No structure alignment results are available for 4KZY.T explicitly.

It is represented by chain 2V7F.a which has more than 40% sequence identity.

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Entity #21 | Chains U

Description: 40S Ribosomal Protein S20 protein | Length: 119

No structure alignment results are available for 4KZY.U explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains V

Description: 40S Ribosomal Protein S21 protein | Length: 83

No structure alignment results are available for 4KZY.V explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #23 | Chains W

Description: 40S Ribosomal Protein S15A protein | Length: 130

No structure alignment results are available for 4KZY.W explicitly.

It is represented by chain 1I6U.a which has more than 50% sequence identity.

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Entity #24 | Chains X

Description: 40S Ribosomal Protein S23 protein | Length: 143

No structure alignment results are available for 4KZY.X explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #25 | Chains Y

Description: 40S Ribosomal Protein S24 protein | Length: 133

No structure alignment results are available for 4KZY.Y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains Z

Description: 40S Ribosomal Protein S25 protein | Length: 125

No structure alignment results are available for 4KZY.Z explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains a

Description: 40S Ribosomal Protein S26 protein | Length: 115

No structure alignment results are available for 4KZY.a explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains b

Description: 40S Ribosomal Protein S27 protein | Length: 84

No structure alignment results are available for 4KZY.b explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains c

Description: 40S Ribosomal Protein S28 protein | Length: 69

No structure alignment results are available for 4KZY.c explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains C

Description: 40S Ribosomal Protein S2 protein | Length: 278

No structure alignment results are available for 4KZY.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains d

Description: 40S Ribosomal Protein S29 protein | Length: 56

No structure alignment results are available for 4KZY.d explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #31 | Chains e

Description: 40S Ribosomal Protein S30 protein | Length: 133

No structure alignment results are available for 4KZY.e explicitly.

It is represented by chain 4KZZ.e which is 100% sequence identical.

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Entity #32 | Chains f

Description: 40S Ribosomal Protein S27A protein | Length: 156

No structure alignment results are available for 4KZY.f explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #33 | Chains g

Description: 40S Ribosomal Protein RACK1 protein | Length: 317

No structure alignment results are available for 4KZY.g explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

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Entity #34 | Chains i

Description: 18S Ribosomal RNA rna | Length: 1863

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #35 | Chains l

Description: human initiation factor eIF1 protein | Length: 113

No structure alignment results are available for 4KZY.l explicitly.

It is represented by chain 4KZX.l which is 100% sequence identical.

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Entity #36 | Chains n

Description: human initiation factor eIF1A protein | Length: 144

No structure alignment results are available for 4KZY.n explicitly.

It is represented by chain 4KZZ.n which is 100% sequence identical.

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Entity #4 | Chains D

Description: 40S Ribosomal Protein S3 protein | Length: 243

No structure alignment results are available for 4KZY.D explicitly.

It is represented by chain 4BSZ.A which has more than 70% sequence identity.

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Entity #5 | Chains E

Description: 40S Ribosomal Protein S4X protein | Length: 263

No structure alignment results are available for 4KZY.E explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #6 | Chains F

Description: 40S Ribosomal Protein S5 protein | Length: 204

No structure alignment results are available for 4KZY.F explicitly.

It is represented by chain 1IQV.a which has more than 40% sequence identity.

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Entity #7 | Chains G

Description: 40S Ribosomal Protein S6 protein | Length: 249

No structure alignment results are available for 4KZY.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains H

Description: 40S Ribosomal Protein S7 protein | Length: 194

No structure alignment results are available for 4KZY.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #9 | Chains I

Description: 40S Ribosomal Protein S8 protein | Length: 208

No structure alignment results are available for 4KZY.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References