Structural Similarities for the Entities in PDB 4KMU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,F,G

Description: DNA-directed RNA polymerase subunit alpha protein | Length: 329

No structure alignment results are available for 4KMU.A, 4KMU.B, 4KMU.F, 4KMU.G explicitly.

These chains are represented by chain 2A6H.a which has more than 40% sequence identity.

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View how chain 4KMU.G compares with the representative chain d2a6ha1. Select a comparison method:


Entity #2 | Chains C,H

Description: DNA-directed RNA polymerase subunit beta protein | Length: 1342

No structure alignment results are available for 4KMU.C, 4KMU.H explicitly.

These chains are represented by chain 4YG2.C which is 100% sequence identical.

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View how chain 4KMU.H compares with the representative chain PDP:4YG2Ca. Select a comparison method:


Entity #3 | Chains D,I

Description: DNA-directed RNA polymerase subunit beta' protein | Length: 1407

No structure alignment results are available for 4KMU.D, 4KMU.I explicitly.

These chains are represented by chain 4YG2.D which is 100% sequence identical.

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View how chain 4KMU.I compares with the representative chain PDP:4YG2Da. Select a comparison method:


Entity #4 | Chains E,J

Description: DNA-directed RNA polymerase subunit omega protein | Length: 91

No structure alignment results are available for 4KMU.E, 4KMU.J explicitly.

These chains are represented by chain 4YG2.E which is 100% sequence identical.

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View how chain 4KMU.J compares with the representative chain PDP:4YG2Ea. Select a comparison method:


Entity #5 | Chains X,Y

Description: RNA polymerase sigma factor RpoD protein | Length: 613

No structure alignment results are available for 4KMU.X, 4KMU.Y explicitly.

These chains are represented by chain 4YG2.F which is 100% sequence identical.

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View how chain 4KMU.Y compares with the representative chain PDP:4YG2Fa. Select a comparison method:


References