Structural Similarities for the Entities in PDB 4KI2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains D,E,F,G

Description: DNA (5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3') dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B

Description: RNA polymerase sigma factor protein | Length: 245

No structure alignment results are available for 4KI2.A, 4KI2.B explicitly.

These chains are represented by chain 3UGO.A which is 100% sequence identical.

Show structure comparison results


View how chain 4KI2.B compares with the representative chain PDP:3UGOAa. Select a comparison method: