Structural Similarities for the Entities in PDB 4KDP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G

Description: TcaR transcription regulator protein | Length: 151

No structure alignment results are available for 4KDP.A, 4KDP.B, 4KDP.C, 4KDP.D, 4KDP.E, 4KDP.F, 4KDP.G explicitly.

These chains are represented by chain 3KP7.A which is 100% sequence identical.

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View how chain 4KDP.G compares with the representative chain PDP:3KP7Aa. Select a comparison method:

Entity #2 | Chains H,J

Description: DNA (5'-D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3') dna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.