Structural Similarities for the Entities in PDB 4K4Z

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E,I,M

Description: RNA-dependent RNA polymerase protein | Length: 472

No structure alignment results are available for 4K4Z.A, 4K4Z.E, 4K4Z.I, 4K4Z.M explicitly.

These chains are represented by chain 4ZP6.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 4K4Z.M compares with the representative chain PDP:4ZP6Aa. Select a comparison method:


Entity #2 | Chains B,F,J,N

Description: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3') rna | Length: 24

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C,G,K,O

Description: RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3') rna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains D,H,L,P

Description: RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') rna | Length: 9

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References