The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Jun-20-2017
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A detailed description of the procedure for the all vs. all alignments is available.
Description: RNA-directed RNA polymerase 3D-POL protein | Length: 471
These chains are represented by chain 4ZP6.A which has more than 70% sequence identity.
View how chain 4K4V.E compares with the representative chain PDP:4ZP6Aa. Select a comparison method:
Description: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3') rna | Length: 26
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: DNA/RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-D(P*C)-3') hybrid | Length: 17