Structural Similarities for the Entities in PDB 4JUO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: DNA topoisomerase 4 subunit A protein | Length: 496

No structure alignment results are available for 4JUO.A explicitly.

It is represented by chain 3ILW.A which has more than 50% sequence identity.

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View how chain 4JUO.A compares with the representative chain PDP:3ILWAa. Select a comparison method:


Entity #2 | Chains C

Description: DNA topoisomerase 4 subunit B protein | Length: 670

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Entity #3 | Chains E

Description: E-site DNA dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains F

Description: E-site DNA dna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains G

Description: E-site DNA dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains H

Description: E-site DNA dna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References