Structural Similarities for the Entities in PDB 4INR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,O

Description: Proteasome component Y7 protein | Length: 250

No structure alignment results are available for 4INR.A, 4INR.O explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #10 | Chains J,X

Description: Proteasome component C11 protein | Length: 198

No structure alignment results are available for 4INR.J, 4INR.X explicitly.

These chains are represented by chain 4R17.J which is 100% sequence identical.

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Entity #11 | Chains K,Y

Description: Proteasome component PRE2 protein | Length: 212

No structure alignment results are available for 4INR.K, 4INR.Y explicitly.

These chains are represented by chain 4R17.K which is 100% sequence identical.

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View how chain 4INR.Y compares with the representative chain PDP:4R17Ka. Select a comparison method:


Entity #12 | Chains L,Z

Description: Proteasome component C5 protein | Length: 222

No structure alignment results are available for 4INR.L, 4INR.Z explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

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Entity #13 | Chains M,a

Description: Proteasome component PRE4 protein | Length: 233

No structure alignment results are available for 4INR.M, 4INR.a explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

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Entity #14 | Chains N,b

Description: Proteasome component PRE3 protein | Length: 196

No structure alignment results are available for 4INR.N, 4INR.b explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

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Entity #2 | Chains B,P

Description: Proteasome component Y13 protein | Length: 258

No structure alignment results are available for 4INR.B, 4INR.P explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #3 | Chains C,Q

Description: Proteasome component PRE6 protein | Length: 254

No structure alignment results are available for 4INR.C, 4INR.Q explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #4 | Chains D,R

Description: Proteasome component PUP2 protein | Length: 260

No structure alignment results are available for 4INR.D, 4INR.R explicitly.

These chains are represented by chain 1YAR.a which has more than 40% sequence identity.

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Entity #5 | Chains E,S

Description: Proteasome component PRE5 protein | Length: 234

No structure alignment results are available for 4INR.E, 4INR.S explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

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Entity #6 | Chains F,T

Description: Proteasome component C1 protein | Length: 288

No structure alignment results are available for 4INR.F, 4INR.T explicitly.

These chains are represented by chain 4R17.F which is 100% sequence identical.

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Entity #7 | Chains G,U

Description: Proteasome component C7-alpha protein | Length: 252

No structure alignment results are available for 4INR.G, 4INR.U explicitly.

These chains are represented by chain 4R17.G which is 100% sequence identical.

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Entity #8 | Chains H,V

Description: Proteasome component PUP1 protein | Length: 232

No structure alignment results are available for 4INR.H, 4INR.V explicitly.

These chains are represented by chain 4R17.H which is 100% sequence identical.

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Entity #9 | Chains I,W

Description: Proteasome component PUP3 protein | Length: 205

No structure alignment results are available for 4INR.I, 4INR.W explicitly.

These chains are represented by chain 4R17.I which is 100% sequence identical.

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References