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An Information Portal to 105025 Biological Macromolecular Structures

Yeast 20S proteasome in complex with the vinyl sulfone LU102
4INR

Structural Similarities for the Entities in PDB 4INR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Entity #1: Chains: A,O
Description: Proteasome component Y7 protein
Length: 250
No structure alignment results are available for 4INR.A, 4INR.O explicitly.

These chains are represented by chain 1YAR.A which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 1YAR.A

 
 
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To see how chain 4INR.O compares with the representative chain d1yara1 select a method below:





Entity #10: Chains: J,X
Description: Proteasome component C11 protein
Length: 198
No structure alignment results are available for 4INR.J, 4INR.X explicitly.

These chains are represented by chain 4R17.J which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.J

 
 
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To see how chain 4INR.X compares with the representative chain PDP:4R17Ja select a method below:





Entity #11: Chains: K,Y
Description: Proteasome component PRE2 protein
Length: 212
No structure alignment results are available for 4INR.K, 4INR.Y explicitly.

These chains are represented by chain 4R17.K which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.K

 
 
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To see how chain 4INR.Y compares with the representative chain PDP:4R17Ka select a method below:





Entity #12: Chains: L,Z
Description: Proteasome component C5 protein
Length: 222
No structure alignment results are available for 4INR.L, 4INR.Z explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.L

 
 
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To see how chain 4INR.Z compares with the representative chain PDP:4R17La select a method below:





Entity #13: Chains: M,a
Description: Proteasome component PRE4 protein
Length: 233
No structure alignment results are available for 4INR.M, 4INR.a explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.M

 
 
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To see how chain 4INR.a compares with the representative chain PDP:4R17Ma select a method below:





Entity #14: Chains: N,b
Description: Proteasome component PRE3 protein
Length: 196
No structure alignment results are available for 4INR.N, 4INR.b explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.N

 
 
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To see how chain 4INR.b compares with the representative chain PDP:4R17Na select a method below:





Entity #2: Chains: B,P
Description: Proteasome component Y13 protein
Length: 258
No structure alignment results are available for 4INR.B, 4INR.P explicitly.

These chains are represented by chain 1YAR.A which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 1YAR.A

 
 
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To see how chain 4INR.P compares with the representative chain d1yara1 select a method below:





Entity #3: Chains: C,Q
Description: Proteasome component PRE6 protein
Length: 254
No structure alignment results are available for 4INR.C, 4INR.Q explicitly.

These chains are represented by chain 1YAR.A which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 1YAR.A

 
 
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To see how chain 4INR.Q compares with the representative chain d1yara1 select a method below:





Entity #4: Chains: D,R
Description: Proteasome component PUP2 protein
Length: 260
No structure alignment results are available for 4INR.D, 4INR.R explicitly.

These chains are represented by chain 1YAR.A which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 1YAR.A

 
 
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To see how chain 4INR.R compares with the representative chain d1yara1 select a method below:





Entity #5: Chains: E,S
Description: Proteasome component PRE5 protein
Length: 234
No structure alignment results are available for 4INR.E, 4INR.S explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.E

 
 
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To see how chain 4INR.S compares with the representative chain PDP:4R17Ea select a method below:





Entity #6: Chains: F,T
Description: Proteasome component C1 protein
Length: 288
No structure alignment results are available for 4INR.F, 4INR.T explicitly.

These chains are represented by chain 4R17.F which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.F

 
 
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To see how chain 4INR.T compares with the representative chain PDP:4R17Fa select a method below:





Entity #7: Chains: G,U
Description: Proteasome component C7-alpha protein
Length: 252
No structure alignment results are available for 4INR.G, 4INR.U explicitly.

These chains are represented by chain 4R17.G which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.G

 
 
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To see how chain 4INR.U compares with the representative chain PDP:4R17Ga select a method below:





Entity #8: Chains: H,V
Description: Proteasome component PUP1 protein
Length: 232
No structure alignment results are available for 4INR.H, 4INR.V explicitly.

These chains are represented by chain 4R17.H which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.H

 
 
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To see how chain 4INR.V compares with the representative chain PDP:4R17Ha select a method below:





Entity #9: Chains: I,W
Description: Proteasome component PUP3 protein
Length: 205
No structure alignment results are available for 4INR.I, 4INR.W explicitly.

These chains are represented by chain 4R17.I which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4R17.I

 
 
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To see how chain 4INR.W compares with the representative chain PDP:4R17Ia select a method below:





  • Update Status Hide
    Nov 18 2014

    Cluster data are up-to-date as of:
     
  • Table Legend Hide
    • Rank: current row position. Changes with different sorting orders and filter rules
    • Domain 2: Domain name of 2nd domain. Can be either a SCOP ID (d<PDB ID><Chain ID><Domain ID>), ProteinDomainParser ID (PDP:<PDB ID><Chain ID><Domain ID>)
    • Title: Protein chain description
    • P-value: P-value of this alignment (FATCAT) (default sorted by this)
    • Score: Raw alignment score (FATCAT)
    • RMSD: RMSD value of the alignment
    • Len1: Domain 1 length
    • Len2: Domain 2 length
    • %ID: % sequence identity in the alignment. A 40% sequence identity filter is applied before the structure alignments are calculated, so most results show low similarity. If the sequences are of vastly different lengths, the clustering procedure will group them in different clusters, even if they share a region of high sequence similarity.
    • %Cov1: The coverage, or %, of aligned residues in chain 1
    • %Cov2: The coverage, or %, of aligned residues in chain 2

    The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results lense img icon to apply other filtering criteria.

     
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Documentation

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