Structural Similarities for the Entities in PDB 4II9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: FemX protein | Length: 343

No structure alignment results are available for 4II9.A explicitly.

It is represented by chain 3GKR.A which is 100% sequence identical.

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View how chain 4II9.A compares with the representative chain PDP:3GKRAa. Select a comparison method:

Entity #2 | Chains B

Description: 5-mer peptide protein | Length: 5

This entity is too short to be considered for the all vs. all structure alignments.

Entity #3 | Chains C

Description: RNA (5'-R(P*CP*CP*(A9Z))-3') rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.