Structural Similarities for the Entities in PDB 4II2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Ubiquitin-activating enzyme E1 1 protein | Length: 1001

No structure alignment results are available for 4II2.A explicitly.

It is represented by chain 4NNJ.A which has more than 50% sequence identity.

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View how chain 4II2.A compares with the representative chain PDP:4NNJAa. Select a comparison method:


Entity #2 | Chains B

Description: Ubiquitin-60S ribosomal protein L40 protein | Length: 83

No structure alignment results are available for 4II2.B explicitly.

It is represented by chain 4XOF.A which has more than 90% sequence identity.

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View how chain 4II2.B compares with the representative chain PDP:4XOFAa. Select a comparison method:


Entity #3 | Chains C

Description: Ubiquitin-conjugating enzyme E2 4 protein | Length: 163

No structure alignment results are available for 4II2.C explicitly.

It is represented by chain 1Z2U.a which has more than 70% sequence identity.

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View how chain 4II2.C compares with the representative chain d1z2ua1. Select a comparison method:


References