Structural Similarities for the Entities in PDB 4IHT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: HTH-type transcriptional regulator BenM protein | Length: 94

No structure alignment results are available for 4IHT.A, 4IHT.B, 4IHT.C, 4IHT.D explicitly.

These chains are represented by chain 3M1E.A which is 100% sequence identical.

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View how chain 4IHT.D compares with the representative chain PDP:3M1EAa. Select a comparison method:


Entity #2 | Chains E,G

Description: benA site 1 DNA dna | Length: 25

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains F,H

Description: benA site 1 DNA - complement dna | Length: 25

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References