Structural Similarities for the Entities in PDB 4IG8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 2'-5'-oligoadenylate synthase 1 protein | Length: 349

No structure alignment results are available for 4IG8.A explicitly.

It is represented by chain 4XQ7.A which has more than 40% sequence identity.

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View how chain 4IG8.A compares with the representative chain PDP:4XQ7Aa. Select a comparison method:


Entity #2 | Chains B

Description: RNA (5'-R(*GP*GP*CP*UP*UP*UP*UP*GP*AP*CP*CP*UP*UP*UP*AP*UP*GP*C)-3') rna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: RNA (5'-R(*GP*CP*AP*UP*AP*AP*AP*GP*GP*UP*CP*AP*AP*AP*AP*GP*CP*C)-3') rna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References