Structural Similarities for the Entities in PDB 4IEM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: DNA-(apurinic or apyrimidinic site) lyase protein | Length: 317

No structure alignment results are available for 4IEM.A, 4IEM.B, 4IEM.C, 4IEM.D explicitly.

These chains are represented by chain 3G91.A which has more than 40% sequence identity.

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View how chain 4IEM.D compares with the representative chain PDP:3G91Aa. Select a comparison method:


Entity #2 | Chains E,H,K,N

Description: DNA (5'-D(*GP*CP*TP*AP*C)-3') dna | Length: 5

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains F,I,L,O

Description: DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') dna | Length: 6

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains G,J,M,P

Description: DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References