Structural Similarities for the Entities in PDB 4IBU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: Cellular tumor antigen p53 protein | Length: 200

No structure alignment results are available for 4IBU.A, 4IBU.B, 4IBU.C, 4IBU.D explicitly.

These chains are represented by chain 3D06.A which has more than 95% sequence identity.

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View how chain 4IBU.D compares with the representative chain PDP:3D06Aa. Select a comparison method:

Entity #2 | Chains E,F,G,H

Description: DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3') dna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.