Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.

Martin, R.N; McGeehan, J.E; Kneale, G.

Structural Similarities for the Entities in PDB 4I6U

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D,E,F

Description: Regulatory protein protein | Length: 82

No structure alignment results are available for 4I6U.A, 4I6U.B, 4I6U.C, 4I6U.D, 4I6U.E, 4I6U.F explicitly.

These chains are represented by chain 4I6R.A which has more than 95% sequence identity.

Show structure comparison results for representative 4I6R.A

References

[1] Andreas Prlić; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985
[2] The all vs. all comparisons are based on jFATCAT (a Java port of the original FATCAT algorithm Yuzhen Ye & Adam Godzik (2003))
Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Bioinformatics vol.19 suppl. 2. ii246-ii255.

[3] Andreeva A., Howorth D., Chandonia J.-M., Brenner S.E., Hubbard T.J.P., Chothia C., Murzin A.G. (2008).
Data growth and its impact on the SCOP database: new developments.
Nucl. Acids Res. 2008 36: D419-D425
[4] Alexandrov N., Shindyalov I. (2003)
PDP: protein domain parser.
Bioinformatics 2003 Feb;19(3);429-30.

139555 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

4I6U

Crystal Structure of a Y37F mutant of the Restriction-Modification Controller Protein C.Esp1396I

Structural Similarities for the Entities in PDB 4I6U

Info & Help Documentation

No structure alignment results are available for 4I6U.A, 4I6U.B, 4I6U.C, 4I6U.D, 4I6U.E, 4I6U.F explicitly.

References

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139555 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

4I6U

Crystal Structure of a Y37F mutant of the Restriction-Modification Controller Protein C.Esp1396I

Structural Similarities for the Entities in PDB 4I6U

Info & Help Documentation

No structure alignment results are available for 4I6U.A, 4I6U.B, 4I6U.C, 4I6U.D, 4I6U.E, 4I6U.F explicitly.

References