Structural Similarities for the Entities in PDB 4I3S

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains G

Description: Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) protein | Length: 190

No structure alignment results are available for 4I3S.G explicitly.

It is represented by chain 4I3R.G which is 100% sequence identical.

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View how chain 4I3S.G compares with the representative chain PDP:4I3RGa. Select a comparison method:


Entity #2 | Chains H

Description: Heavy chain of VRC-PG04 Fab protein | Length: 228

No structure alignment results are available for 4I3S.H explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 4I3S.H compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains L

Description: Light chain of VRC-PG04 Fab protein | Length: 208

No structure alignment results are available for 4I3S.L explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 4I3S.L compares with the representative chain PDP:4NZULa. Select a comparison method:


References