Structural Similarities for the Entities in PDB 4HQB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E

Description: Single-stranded DNA-binding protein DdrB protein | Length: 148

No structure alignment results are available for 4HQB.A, 4HQB.B, 4HQB.C, 4HQB.D, 4HQB.E explicitly.

These chains are represented by chain 4NOE.A which is 100% sequence identical.

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View how chain 4HQB.E compares with the representative chain PDP:4NOEAa. Select a comparison method:


Entity #2 | Chains M

Description: 5'-D(*TP*TP*TP*T)-3' dna | Length: 4

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains N

Description: 5'-D(P*TP*TP*TP*TP*T)-3' dna | Length: 5

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References